I provide consultation through MycOmics, LLC, including: computational work,
technical consultation, computational infrastructure development/deployment,
mycology/fungal biology education/outreach, software workshops, among other
skills relevant to my expertise.
Please email konkelzach@pm.me for more information, meeting, and contracting.
General expertise:
Genomics
Phylogenetics/phylogenomics
Eukaryote (fungal) & prokaryote genome assembly/annotation
Long-read and short-read Nanopore, PacBio, and Illumina data
Large-scale database infrastructure and automation
Variant calling
DNA extraction and optimization
Transcriptomics
General RNAseq analysis
Gene coexpression network analysis
Transcriptome assembly and genome annotation
Metabolomics
LCMS/MS and GCMS/MS method development
Python analysis of LCMS/MS data (Agilent, Waters, Thermo-Fisher)
Quantitative analysis
General untargeted QToF-derived metabolomics
Computation
Linux
Python
Bash
R
HPC (High performance computing)
AWS (Amazon web services)
Slurm
Torque
Containers (Docker, Singularity)
Fungal (Mycology) outreach
Lecturing
Seminars
Mushroom identification and information
Cultivation and maintenance of an multiphylum culture library
Training in identification
